Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
XOO2625IS1478 transposase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (86 aa)    
Predicted Functional Partners:
tnpA-8
Transposase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.773
Tra8-24
IS30 family transposase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.671
cheY
Chemotaxis protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.484
cheZ
Chemotaxis related protein; Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P).
       0.484
cheA-2
Chemotaxis related protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.484
flhF
Flagellar biosynthetic protein FlhF; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.421
fleN
Flagellar biosynthesis switch protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.421
fliA
RNA polymerase sigma factor FliA; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily.
       0.421
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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