Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cydCABC transporter ATP-binding protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (579 aa)    
Predicted Functional Partners:
strW
Transport protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
0.999
cydB
Cytochrome D ubiquinol oxidase subunit II; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.798
XOO2655
Hypothetical protein; Putative; ORF located using Glimmer/Genemark.
       0.773
cydA-2
Cytochrome D ubiquinol oxidase subunit I; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.705
cioB
Cyanide insensitive terminal oxidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
 0.675
qxtB
Quinol oxidase subunit II; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
 0.675
cydA
Cytochrome D ubiquinol oxidase subunit I; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.619
pstB
Phosphate ABC transporter ATP-binding protein; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.
 
      0.533
abc
ABC transporter ATP-binding protein; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
 
    
0.524
cioA
Cyanide insensitive terminal oxidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
 0.504
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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