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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
argEAcetylornithine deacetylase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (366 aa)    
Predicted Functional Partners:
argG
Argininosuccinate synthase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
 
 0.994
argF
Ornithine carbamoyltransferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.
 
 
 0.988
argC
N-acetyl-gamma-glutamyl-phosphate reductase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the NAGSA dehydrogenase family. Type 1 subfamily.
 
 
 0.966
argH
Argininosuccinate lyase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.925
argD
Acetylornithine aminotransferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.
  
 
 0.924
argI
Arginase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the arginase family.
  
 
 0.913
argB
Acetylglutamate kinase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.878
ArgA-2
N-acetylglutamate synthase and related acetyltransferases; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
 0.821
argA
Amino-acid acetyltransferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.730
proB
Glutamate 5-kinase; Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate.
     
 0.664
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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