Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
PemBPectin methylesterase; Outer membrane lipoprotein that catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA; YbhC localizes to the cellular poles; member of pectinesterase family. (407 aa)    
Predicted Functional Partners:
pel
Pectate lyase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 0.990
pglA
Polygalacturonase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the glycosyl hydrolase 28 family.
  
 0.974
peh-1
Endopolygalacturonase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
    
 0.928
XOO2265
Pectate lyase L precursor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
  0.918
TesA
Lysophospholipase L1 and related esterases; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
   
 0.822
xylB
Xylosidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.722
CelA
Cellobiohydrolase A (1,4-beta-cellobiosidase A); Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the glycosyl hydrolase family 6.
  
   
 0.720
XOO3112
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.715
XOO2912
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
   
 0.709
XOO2913
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.703
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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