Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
XOO2741Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (670 aa)    
Predicted Functional Partners:
rnD
Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family.
       0.684
ank2
Ankyrin-like protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.494
XOO4508
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.480
PilF-2
Tfp pilus assembly protein PilF; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.438
Spy
Predicted O-linked N-acetylglucosamine transferase, SPINDLY family; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.422
phaE
PHA synthase subunit; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.418
XOO2756
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.413
RfaL-2
Lipid A core - O-antigen ligase and related enzymes; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
    0.401
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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