STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AcrR-4TetR/AcrR family transcriptional regulator; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (219 aa)    
Predicted Functional Partners:
acrB
Multidrug efflux transporter; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
     
 0.809
acrA
Multidrug resistance protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
     
 0.747
AcrR
Transcriptional regulator; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.664
rpsU
30S ribosomal protein S21; Identified by sequence similarity; putative; ORF located using Blastx/FrameD; Belongs to the bacterial ribosomal protein bS21 family.
     
 0.589
rpmD
50S ribosomal protein L30; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.583
rpmG
50S ribosomal protein L33; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the bacterial ribosomal protein bL33 family.
      
 0.583
rpmF
50S ribosomal protein L32; Identified by sequence similarity; putative; ORF located using Blastx/FrameD; Belongs to the bacterial ribosomal protein bL32 family.
      
 0.583
XOO2802
NAD-specific glutamate dehydrogenase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.563
rpmI
50S ribosomal protein L35; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the bacterial ribosomal protein bL35 family.
      
 0.480
tolC
TolC protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
     
 0.439
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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