Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PurR-4Transcriptional regulators; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (324 aa)    
Predicted Functional Partners:
fruB
Multiphosphoryl transfer protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 
 0.970
fruK
1-phosphofructokinase (fructose 1-phosphate kinase); Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the carbohydrate kinase PfkB family.
 
   
 0.824
gltB
Glutamate synthase, alpha subunit; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
    
 
 0.791
fruA
PTS system, fructose-specific IIBC component; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
   
 0.785
rbsK
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
  
 0.481
scrK
Fructokinase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.456
XylB
Sugar (pentulose and hexulose) kinases; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 
 0.438
ptsH
Phosphotransferase system HPr enzyme; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
   
 
 0.426
PhnF-2
Transcriptional regulators; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
   
 0.406
rpfN
Regulator of pathogenicity factors; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
   
 0.401
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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