Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pdeA-2c-di-GMP phosphodiesterase A; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (781 aa)    
Predicted Functional Partners:
PutP
Na+/proline symporter; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
 0.950
Rtn-2
FOG: EAL domain; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
0.943
BaeS-7
Signal transduction histidine kinase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.935
Rtn
FOG: EAL domain; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
 0.931
BaeS-6
Signal transduction histidine kinase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
 0.929
BaeS-3
Signal transduction histidine kinase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
 0.922
XOO2330
Sensor histidine kinase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
0.922
XOO4021
Histidine kinase-response regulator hybrid protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
0.920
pdeA
c-di-GMP phosphodiesterase A; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
0.913
XOO3246
Phosphodiesterase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
0.902
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.