Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VapCPredicted nucleic acid-binding protein, contains PIN domain; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (136 aa)    
Predicted Functional Partners:
AbrB
Regulators of stationary/sporulation gene expression; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
     
 0.927
acnB
Aconitate hydratase 2; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the aconitase/IPM isomerase family.
     
 0.853
hipA
HipA protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.775
ParE-3
Plasmid stabilization system protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
   
 0.646
SerB-2
Phosphoserine phosphatase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.642
XOO2667
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.617
rpfA
Aconitase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
     
 0.614
XOO1540
Predicted periplasmic protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.604
XOO1882
Serine protease; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.596
CadC-2
DNA-binding winged-HTH domains; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.574
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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