Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
rpfFRpfF; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (331 aa)    
Predicted Functional Partners:
rpfC
RpfC protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 0.998
rpfB
RpfB protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
 0.925
acdA
acyl-CoA dehydrogenase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 0.837
fadE9
acyl-CoA dehydrogenase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 0.804
rpfG
Response regulator; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
   
 0.802
gcdH
glutaryl-CoA dehydrogenase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 0.796
fadB-3
P-hydroxycinnamoyl CoA hydratase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
   0.743
CaiD
Enoyl-CoA hydratase/carnithine racemase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.741
rpfA
Aconitase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
   
 0.736
CaiA
Acyl-CoA dehydrogenases; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 0.722
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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