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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpfFRpfF; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (331 aa)    
Predicted Functional Partners:
rpfC
RpfC protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 0.999
rpfB
RpfB protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
 0.952
rpfG
Response regulator; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
   
 0.867
acdA
acyl-CoA dehydrogenase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 0.857
fadE9
acyl-CoA dehydrogenase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 0.829
gcdH
glutaryl-CoA dehydrogenase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 0.822
XOO0710
Histidine kinase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
   0.778
fadB-3
P-hydroxycinnamoyl CoA hydratase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
   0.777
rpfA
Aconitase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
   
 
 0.768
CaiA
Acyl-CoA dehydrogenases; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 0.758
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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