Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rpfGResponse regulator; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (419 aa)    
Predicted Functional Partners:
rpfC
RpfC protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 0.995
clp
CAP-like protein; Global transcriptional regulator that regulates virulence factors production by activating or repressing the expression of a large set of genes in diffusible signal factor (DSF) pathway.
    
 0.968
XOO2330
Sensor histidine kinase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 0.957
rpfF
RpfF; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
   
 0.802
rpfB
RpfB protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.796
XOO3246
Phosphodiesterase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 0.780
BaeS-2
Signal transduction histidine kinase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.753
PleD-3
Response regulator containing a CheY-like receiver domain and a GGDEF domain; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
    0.748
XOO0933
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.747
lysU
lysyl-tRNA synthetase heat inducible; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the class-II aminoacyl-tRNA synthetase family.
       0.744
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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