STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylEMFS transporter; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family. (501 aa)    
Predicted Functional Partners:
xylA
Xylose isomerase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the xylose isomerase family.
 
   
 0.852
ctaD
Cytochrome C oxidase subunit I; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B.
      
 0.680
XylB
Sugar (pentulose and hexulose) kinases; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
 0.653
XOO2912
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.623
XOO2913
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.623
iroN
TonB-dependent receptor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.504
gstA
Glutathione S-transferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the GST superfamily.
      
 0.497
gstA-2
Glutathione S-transferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.497
xylR
Xylose repressor-like protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.484
XOO1262
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.484
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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