Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
xylAXylose isomerase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the xylose isomerase family. (445 aa)    
Predicted Functional Partners:
XylB
Sugar (pentulose and hexulose) kinases; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.997
scrK
Fructokinase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
     
 0.960
fruA
PTS system, fructose-specific IIBC component; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
     
 0.924
xylB
Xylosidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the glycosyl hydrolase 43 family.
 
 
 0.924
XynB
Beta-xylosidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the glycosyl hydrolase 43 family.
 
 
 0.913
xylA-2
Xylose isomerase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
0.900
xylE
MFS transporter; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family.
 
   
 0.852
AbfA
Alpha-L-arabinofuranosidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.828
lacZ
Truncated beta-galactosidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the glycosyl hydrolase 2 family.
    
 0.809
glk
Glucose kinase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the bacterial glucokinase family.
     
 0.804
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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