Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
XOO2927Predicted ATPase related to phosphate starvation-inducible protein PhoH; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (469 aa)    
Predicted Functional Partners:
XOO4856
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/FrameD.
       0.779
Bcp
Peroxiredoxin; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.705
thiD
Phosphomethylpyrimidine kinase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.696
dapA
Dihydroxydipicolinate synthase; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
       0.486
XOO2925
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.485
NlpB
Hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.458
gcvR
Glycine cleavage system transcriptional repressor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.435
XOO2929
Predicted alpha/beta hydrolase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.421
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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