Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LysR-6Transcriptional regulator; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the LysR transcriptional regulatory family. (314 aa)    
Predicted Functional Partners:
DedA-2
Hypothetical protein; Catalyzes, although with low efficiency, the sulfur transfer reaction from thiosulfate to cyanide.
 
    0.713
kdgR
Transcriptional regulator; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
   
  
 0.620
XOO2933
Pirin-related protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the pirin family.
   
   0.535
gacA
Transcriptional regulator luxR/uhpA family; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
   
  
 0.517
gltB
Glutamate synthase, alpha subunit; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
     
 0.424
metR
Transcriptional regulator metE/metH family; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the LysR transcriptional regulatory family.
  
     0.400
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.