Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XOO2934Endolysin; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (99 aa)    
Predicted Functional Partners:
XOO4857
Hypothetical protein; Putative; ORF located using FrameD.
       0.773
prtR
Transmembrane regulator protein prtR; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.682
TolB
Periplasmic component of the Tol biopolymer transport system; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.680
tolB
TolB protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
      
 0.680
folA
Dihydrofolate reductase type III; Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis.
      
 0.650
rsc17
Probable bacteriophage endolysin protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.639
tdk
Thymidine kinase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.610
thyA
Thymidylate synthase; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by- product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis.
      
 0.610
T
Phage-related tail protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.536
L
Phage-related capsid completion protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.446
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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