Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
MiaAtRNA delta(2)-isopentenylpyrophosphate transferase; Transfers dimethylallyl groups to AMP as part of the biosynthesis of cytokinin. (249 aa)    
Predicted Functional Partners:
hflX
GTP-binding protein; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.
  
  
 0.757
XOO2264
Hypothetical 125K protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.686
pthA2
Avirulence protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.686
hflC
Integral membrane proteinase subunit; HflC and HflK could regulate a protease.
  
  
 0.682
HflC
Membrane protease subunits, stomatin/prohibitin homologs; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
 0.682
XOO2127
Hypothetical 125K protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.680
pthA3
Avirulence protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.680
hflK
Integral membrane protease subunit; HflC and HflK could encode or regulate a protease.
  
  
 0.676
XOO2128
Hypothetical 125K protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.674
XOO2279
Avirulence protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.673
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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