Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
exoDExoD protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (222 aa)    
Predicted Functional Partners:
tlyC
Hemolysin; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.803
LdhA
Lactate dehydrogenase and related dehydrogenases; Involved in the metabolism of aromatic amino acids; identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
     
 0.625
XOO2975
Phosphate transport regulator (distant homolog of PhoU); Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.490
ppc
Phosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle.
      
 0.487
pitA
Transport protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.482
XOO0803
ABC-type uncharacterized transport system, auxiliary component; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.476
XOO2930
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.445
RfaL-2
Lipid A core - O-antigen ligase and related enzymes; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.406
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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