Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
rpoE-2RNA polymerase sigma-E factor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the sigma-70 factor family. ECF subfamily. (197 aa)    
Predicted Functional Partners:
AprE-2
Subtilisin-like serine proteases; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
    0.848
RseA
Negative regulator of sigma E activity; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
 0.835
cycJ-2
C-type cytochrome biogenesis protein; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family.
       0.762
ccmC
Heme exporter protein C; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family.
       0.757
RpoE
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.749
XOO3002
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.626
XOO3012
Cytochrome c biogenesis factor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.625
dsbE-2
C-type cytochrome biogenesis protein/thioredoxin; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
    0.582
cycK-2
C-type cytochrome biogenesis membrane protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.572
cycL-2
C-type cytochrome biogenesis protein; Possible subunit of a heme lyase.
       0.572
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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