Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
virAVirA-like protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (819 aa)    
Predicted Functional Partners:
OmpR-3
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
   0.933
MauG
Cytochrome c peroxidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.799
PleD-4
Response regulator containing a CheY-like receiver domain and a GGDEF domain; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
   0.724
XOO1249
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.698
OmpR-4
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
   0.690
pilH-2
PilH protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
   0.679
baeR
Two-component system regulatory protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
   0.672
smeR
Two-component system regulatory protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
   0.664
XOO0311
Hypothetical protein; Putative; ORF located using Glimmer/Genemark.
  
     0.663
BaeS-9
Signal transduction histidine kinase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
   0.660
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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