Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FimVTfp pilus assembly protein FimV; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (631 aa)    
Predicted Functional Partners:
nfuA
Thioredoxin-like proteins and domains; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins.
       0.787
uptE
Outer membrane protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
   0.775
ParE-3
Plasmid stabilization system protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.773
CheB
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.770
XOO0347
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
    0.768
Rtn
FOG: EAL domain; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
   
 0.760
XOO1882
Serine protease; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.759
XOO1293
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.755
CadC-2
DNA-binding winged-HTH domains; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
    0.749
XOO1921
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.748
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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