Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
phhbPterin-4-alpha-carbinolamine dehydratase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (148 aa)    
Predicted Functional Partners:
pah
Phenylalanine hydroxylase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 0.995
TonB-4
Periplasmic protein TonB, links inner and outer membranes; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.846
XOO4071
4-hydroxyphenylpyruvate dioxygenase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
 0.782
nfuA
Thioredoxin-like proteins and domains; Involved in iron-sulfur cluster biogenesis. Binds a 4Fe-4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe/S proteins. Could also act as a scaffold/chaperone for damaged Fe/S proteins.
  
    0.691
tyrB
Aromatic-amino-acid aminotransferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
 0.607
hmgA
Homogentisate 1,2-dioxygenase; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate.
  
  
 0.588
FimV
Tfp pilus assembly protein FimV; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.577
uptB
Maleylacetoacetate isomerase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
 0.486
XOO2290
4-hydroxyphenylpyruvate dioxygenase and related hemolysins; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
 0.438
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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