STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XOO3141Proline racemase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the proline racemase family. (341 aa)    
Predicted Functional Partners:
DadA-3
Glycine/D-amino acid oxidases (deaminating); Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.996
HcaD
Oxidoreductase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.992
soxA
Sarcosine oxidase alpha subunit; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
  0.987
dapA-2
Dihydrodipicolinate synthetase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the DapA family.
 
  
 0.946
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
    
 0.917
PutA-2
NAD-dependent aldehyde dehydrogenases; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 
 0.890
AraC-2
AraC-type DNA-binding domain-containing proteins; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.813
dadA-2
D-amino acid dehydrogenase subunit; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
   
 0.791
pepQ-2
Proline dipeptidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.660
tspO
Tryptophan-rich sensory protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
   
    0.546
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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