STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PetEPlastocyanin; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (226 aa)    
Predicted Functional Partners:
XOO3246
Phosphodiesterase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      0.813
copA
Copper resistance protein A precursor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
   
 
 0.786
Hmp
Flavodoxin reductases (ferredoxin-NADPH reductases) family 1; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
 0.735
glbN
Cyanoglobin; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.689
atpG
ATP synthase gamma chain; Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.
   
  
 0.675
nuoM
NADH-ubiquinone oxidoreductase NQO13 subunit; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
    
   0.589
fecA
TonB-dependent receptor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.485
PcbC
Isopenicillin N synthase and related dioxygenases; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the iron/ascorbate-dependent oxidoreductase family.
       0.443
SsnA-2
Cytosine deaminase and related metal-dependent hydrolases; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.413
RimI
Acetyltransferases; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.404
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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