Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PcbCIsopenicillin N synthase and related dioxygenases; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the iron/ascorbate-dependent oxidoreductase family. (300 aa)    
Predicted Functional Partners:
rluC
Pseudouridylate synthase; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
      
 0.690
mrsA
Phosphohexose mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.
       0.638
accD
Acetyl-coenzyme A carboxylase carboxyl transferase; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.
       0.638
gst-5
Glutathione S-transferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
   
 0.480
XOO3246
Phosphodiesterase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.443
PetE
Plastocyanin; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.443
gst
Glutathione S-transferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the GST superfamily.
      
 0.403
gst-2
Glutathione S-transferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the GST superfamily.
      
 0.403
gst-3
Glutathione S-transferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the GST superfamily.
      
 0.403
gst-4
Glutathione S-transferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.403
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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