STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GlpG-3Integral membrane protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (260 aa)    
Predicted Functional Partners:
XOO3283
methylated-DNA-protein-cysteine S-methyltransferase related protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.810
GlpG-4
Hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.735
GlpG-2
Integral membrane protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.686
tatA
Sec-independent protein translocase; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
   
 
 0.603
XOO4874
Reductase; Identified by sequence similarity; putative; ORF located using Blastx/FrameD.
  
    0.541
XOO3211
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.535
XOO3284
IS1595 transposase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.479
kbl
2-amino-3-ketobutyrate CoA ligase; Catalyzes the cleavage of 2-amino-3-ketobutyrate to glycine and acetyl-CoA.
  
  
 0.469
XOO1090
Glutaredoxin-like protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
 0.460
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
      
 0.453
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.