Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
dadA-2D-amino acid dehydrogenase subunit; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (432 aa)    
Predicted Functional Partners:
dadA
D-amino acid dehydrogenase subunit; Oxidative deamination of D-amino acids.
  
  
 
0.922
XOO4071
4-hydroxyphenylpyruvate dioxygenase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
   
 
  0.905
tyrB
Aromatic-amino-acid aminotransferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
     
 0.900
hisC
Histidinol-phosphate aminotransferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
     
  0.900
yxaH
Transport protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.802
XOO3141
Proline racemase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the proline racemase family.
 
   
 0.713
PutA-2
NAD-dependent aldehyde dehydrogenases; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.702
PhoD
Phosphodiesterase/alkaline phosphatase D; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.609
phoD
Alkaline phosphatase D; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.609
dapA-2
Dihydrodipicolinate synthetase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the DapA family.
 
   
 0.569
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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