STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
estALipase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (605 aa)    
Predicted Functional Partners:
acvB
Virulence protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.602
acvB-2
Virulence protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.602
ThiS
Sulfur transfer protein involved in thiamine biosynthesis; With ThiF, ThiG, and ThiO catalyzes the formation of the thiazole moiety of thiamine pyrophosphate.
       0.585
oma
Outer membrane antigen; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
   
 0.573
lipA
Lipoic acid synthetase; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives.
      
 0.559
CsgG
Hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.516
yapH
YapH protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.514
XOO0858
Predicted glycosyltransferases; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.513
XOO1293
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
   
 0.502
FepA-2
Outer membrane receptor for ferrienterochelin and colicins; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.481
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.