STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sac1Sulfur deprivation response regulator; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (620 aa)    
Predicted Functional Partners:
micA
DNA mismatch repair protein; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
  
    0.712
maeB
NADP-dependent malic enzyme; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.595
fumB
Fumarate hydratase; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
     
 0.592
traB
Pheromone shutdown protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.547
ndhF
NADH dehydrogenase subunit 5; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
 0.501
nodQ
ATP sulfurylase; Catalyzes the synthesis of activated sulfate. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.
  
  
 0.500
thiG
Thiamine biosynthesis protein; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.
       0.482
PutP
Na+/proline symporter; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
 0.478
hpaA
HpaA; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.457
XOO4502
Predicted permeases; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
   0.451
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.