Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pepN-2Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (908 aa)    
Predicted Functional Partners:
yrbC
Toluene tolerance protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.648
cycK
C-type cytochrome biogenesis membrane protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.641
cycK-2
C-type cytochrome biogenesis membrane protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.641
vacJ
Lipoprotein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.626
XOO2425
Predicted membrane protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.583
RfaG-4
Glycosyltransferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
    0.484
groES
10kDa chaperonin; Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter.
      
 0.480
FepA
Outer membrane receptor for ferrienterochelin and colicins; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.449
XOO3539
Dipeptidyl carboxypeptidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
   
 0.439
fusA
Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily.
   
 
 0.439
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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