STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
docDeath-on-curing protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (156 aa)    
Predicted Functional Partners:
XOO3443
Hypothetical protein; Putative; ORF located using Glimmer/Genemark.
 
   
 0.932
avrB6
Avirulence protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.683
HigB
Plasmid maintenance system killer protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.683
hipA
HipA protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.650
lexA-2
LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.
     
 0.459
DinP
Nucleotidyltransferase/DNA polymerase involved in DNA repair; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.444
XOO3441
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.444
Epimerase
Epimerase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.431
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.