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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XOO3452Type I restriction-modification system endonuclease; Subunit R is required for both nuclease and ATPase activities, but not for modification. (846 aa)    
Predicted Functional Partners:
hsdM-1
Type I restriction system adenine methylase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.973
XOO3455
Restriction endonuclease S subunits; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.937
hsdM-2
Type I restriction-modification system, M subunit; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.906
HsdS
Restriction endonuclease S subunits; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.766
SSL2
DNA or RNA helicases of superfamily II; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.555
XOO4878
Hypothetical protein; Putative; ORF located using FrameD.
       0.413
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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