Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
hsdM-2Type I restriction-modification system, M subunit; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (514 aa)    
Predicted Functional Partners:
HsdS
Restriction endonuclease S subunits; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.994
hsdR-2
Type I restriction-modification system, R subunit; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.978
XOO3455
Restriction endonuclease S subunits; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.957
XOO3452
Type I restriction-modification system endonuclease; Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
  
 0.815
AbiF
Abortive infection bacteriophage resistance protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.652
XOO3458
Uncharacterized conserved protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
    0.573
XOO2794
Superfamily I DNA and RNA helicases and helicase subunits; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.530
hsdM-1
Type I restriction system adenine methylase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
    
0.510
XOO3454
Hypothetical protein; Putative; ORF located using Glimmer/Genemark.
       0.461
uvrB
Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...]
    
   0.444
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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