STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XOO3537PAP2 (acid phosphatase) superfamily protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (261 aa)    
Predicted Functional Partners:
yjdB
Inner membrane protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
   
 0.927
colS-2
Two-component system sensor protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
   
 0.585
ArnT-3
4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.580
XOO3539
Dipeptidyl carboxypeptidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.572
colR-2
Two-component system regulatory protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.528
phaE
PHA synthase subunit; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.518
XOO4306
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.518
XOO1292
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.493
oprO-3
Polyphosphate-selective porin O; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.482
XOO1540
Predicted periplasmic protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.474
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.