Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
raxAPutative membrane fusion protein RaxA; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (439 aa)    
Predicted Functional Partners:
raxB
Putative ABC transporter protein RaxB; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.995
SunT
ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.914
raxP
ATP sulfurylase small subunit RaxP; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.770
EmrA
Multidrug resistance efflux pump; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.760
XOO3800
Sulfotransferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
   
 0.671
tolC
TolC protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
 0.649
phoP
Two-component system regulatory protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.601
XOO2266
Putative phage replication protein RstA; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.529
fecA
TonB-dependent receptor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.522
FepA
Outer membrane receptor for ferrienterochelin and colicins; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.514
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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