Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
UbiE-6Methylase involved in ubiquinone/menaquinone biosynthesis; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (302 aa)    
Predicted Functional Partners:
XOO3800
Sulfotransferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
    0.870
XOO3020
Unknown protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
   0.652
dnrO
Repressor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.639
pel
Pectate lyase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
    0.558
XOO3122
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.547
XOO4036
Cellulase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
  
     0.462
XOO4751
MFS transporter; Identified by sequence similarity; putative; ORF located using Blastx/FrameD.
  
     0.447
AcrR-5
TetR/AcrR family transcriptional regulator; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
   0.441
hrpXct
HrpX protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.427
bioC-2
Biotin synthesis protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.424
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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