Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PhnBHypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (201 aa)    
Predicted Functional Partners:
traF
TraF protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.650
hisF
Cyclase; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit.
      
 0.644
thrC
Threonine synthase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
   
 0.624
IcmF
Hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.609
IcmF-2
Hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.609
XOO4874
Reductase; Identified by sequence similarity; putative; ORF located using Blastx/FrameD.
      
 0.600
ThiE
Thiamine monophosphate synthase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the Nudix hydrolase family.
       0.511
xpsD
General secretion pathway protein D; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.480
NlpD-6
Membrane proteins related to metalloendopeptidases; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.480
XOO4551
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
    0.475
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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