Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
OsmYPredicted periplasmic or secreted lipoprotein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (123 aa)    
Predicted Functional Partners:
XOO0436
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the UPF0337 (CsbD) family.
 
    0.947
XOO4217
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.936
osmC
Osmotically inducible protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
   
  
 0.684
XOO1885
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
    0.677
ostA
Organic solvent tolerance precursor; Probably involved in the osmoprotection via the biosynthesis of trehalose. Catalyzes the transfer of glucose from UDP-alpha-D- glucose (UDP-Glc) to D-glucose 6-phosphate (Glc-6-P) to form trehalose- 6-phosphate. Acts with retention of the anomeric configuration of the UDP-sugar donor; Belongs to the glycosyltransferase 20 family.
   
  
 0.663
Bfr
Bacterioferritin (cytochrome b1); Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
    0.558
katE
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
  
 0.548
ydgJ
Oxidoreductase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.523
wrbA
Tryptophan repressor binding protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
   
    0.497
XOO3616
Tryptophan repressor binding protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
   
    0.497
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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