Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pepN-3Aminopeptidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (690 aa)    
Predicted Functional Partners:
DAP2-10
Dipeptidyl aminopeptidases/acylaminoacyl-peptidases; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.686
miaA
tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.
 
    
 0.675
XOO0711
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the UPF0234 family.
     
 0.642
yrbC
Toluene tolerance protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.635
cycK
C-type cytochrome biogenesis membrane protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.631
cycK-2
C-type cytochrome biogenesis membrane protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.631
CspR
tRNA/rRNA methyltransferase; Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S-adenosyl-L-methionine to the 2'-OH of the wobble nucleotide.
      
 0.609
XOO1138
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.607
XOO3988
Response regulator; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.588
XOO3990
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.588
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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