Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
dhaAHaloalkane dehalogenase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (300 aa)    
Predicted Functional Partners:
CaiC-2
Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II; Catalyzes the specific recognition and activation of amino acids during peptide synthesis.
 
 0.989
fabH-3
3-oxoacyl- synthase III; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
   
 0.930
cdh
NAD(P)H steroid dehydrogenase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
   
 0.857
XOO4211
Methyltransferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.778
SSL2
DNA or RNA helicases of superfamily II; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.778
XOO4210
Conserved hypothetical protein; Adenylyltransferase that mediates the addition of adenosine 5'-monophosphate (AMP) to specific residues of target proteins.
       0.774
XOO4208
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.438
apaH
Diadenosine tetraphosphatase; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family.
    
  0.411
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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