STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
avrXa7Avirulence/virulence protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (1080 aa)    
Predicted Functional Partners:
XOO2127
Hypothetical 125K protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
  
0.901
XOO2264
Hypothetical 125K protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
  
0.901
avrXa3
Avirulence protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
    
  
0.800
XOO4401
Shikimate kinase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.730
talB
Transaldolase B; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway.
      
 0.683
metC
Putative cystathionine gamma-synthase protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.674
MiaA
tRNA delta(2)-isopentenylpyrophosphate transferase; Transfers dimethylallyl groups to AMP as part of the biosynthesis of cytokinin.
 
     0.662
ruvC
Holliday junction resolvase; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.
     
 0.654
yncA
Phosphinothricin acetyltransferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.651
DnaG
DNA primase (bacterial type); Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
    0.620
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.