Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gnlGluconolactonase precursor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (307 aa)    
Predicted Functional Partners:
idnK
Gluconokinase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
    
 0.913
LdhA
Lactate dehydrogenase and related dehydrogenases; Involved in the metabolism of aromatic amino acids; identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
 
 0.912
hrmI
Hexuronic acid isomerase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
     
 0.875
XOO4275
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.842
pglA
Polygalacturonase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the glycosyl hydrolase 28 family.
     
  0.800
peh-1
Endopolygalacturonase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
     
  0.800
gfo
Glucose-fructose oxidoreductase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 
 0.701
aguA
Alpha-glucuronidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the glycosyl hydrolase 67 family.
  
   
 0.662
XOO3723
Gluconolactonase precursor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.650
mtlD
Mannitol dehydrogenase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
   
 0.602
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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