Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
XOO4538Predicted metal-dependent hydrolase of the TIM-barrel fold; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (290 aa)    
Predicted Functional Partners:
Tas-4
Oxidoreductase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
 0.997
XOO4535
RTS beta protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
  
 0.972
ucpA
Oxidoreductase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.866
XOO0340
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
   
 0.804
MhpD-2
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway); Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.801
gnl
Gluconolactonase precursor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.522
kdgR
Transcriptional regulator; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.504
XynB
Beta-xylosidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the glycosyl hydrolase 43 family.
       0.493
HcaD
Oxidoreductase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.471
fucP
Fucose permease; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
   
 0.435
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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