Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
NagCTranscriptional regulator/sugar kinase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (233 aa)    
Predicted Functional Partners:
XOO0427
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the MtfA family.
    
 
 0.616
fruA
PTS system, fructose-specific IIBC component; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
     
 0.604
Fur
Fe2+/Zn2+ uptake regulation proteins; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the Fur family.
  
  
 0.601
fur
Ferric uptake regulator Fur; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the Fur family.
  
  
 0.601
ahpC
Alkyl hydroperoxide reductase subunit C; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.
  
    0.595
XylB
Sugar (pentulose and hexulose) kinases; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.572
dgd
D-galactose 1-dehydrogenase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
   
 0.525
xanB
Phosphomannose isomerase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the mannose-6-phosphate isomerase type 2 family.
     
 0.503
PutP
Na+/proline symporter; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
 0.502
PhnF-2
Transcriptional regulators; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.496
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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