Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
PhoDPhosphodiesterase/alkaline phosphatase D; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (523 aa)    
Predicted Functional Partners:
phoA
Alkaline phosphatase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the alkaline phosphatase family.
  
 
 0.971
phoD
Alkaline phosphatase D; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 
0.959
folE
GTP cyclohydrolase I; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
    
 0.910
folB
Dihydroneopterin aldolase; Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin.
     
 0.905
ptps
6-pyruvoyl tetrahydrobiopterin synthase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
     
  0.900
folE2
Conserved hypothetical protein; Converts GTP to 7,8-dihydroneopterin triphosphate.
     
  0.900
glpQ-4
Glycerophosphoryl diester phosphodiesterase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
  
 0.801
DadA-2
Glycine/D-amino acid oxidases (deaminating); Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.609
dadA-2
D-amino acid dehydrogenase subunit; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.609
pntA-2
Pyridine nucleotide transhydrogenase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
     
  0.500
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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