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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yhdG-3Amino acid transporter; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (579 aa)    
Predicted Functional Partners:
AmyA
Glycosidases; Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)-glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB.
   
 0.546
AmyA-2
Glycosidases; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
   
 0.546
XOO4573
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily.
     
 0.528
XOO4571
Transposase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.499
rmrB
Transport protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the major facilitator superfamily.
      
 0.446
Gsp
Glutathionylspermidine synthase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.443
rmrA
Transport protein; Identified by sequence similarity; putative; ORF located using Blastx/FrameD.
      
 0.443
PutP
Na+/proline symporter; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
 
 0.415
bioA
Adenosylmethionine-8-amino-7- oxononanoate aminotransferase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
     
 0.409
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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