STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slyATranscriptional regulator for cryptic hemolysin; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark. (211 aa)    
Predicted Functional Partners:
XOO4603
Predicted membrane protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
   
 0.924
nodT
Outer membrane efflux protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
    0.860
pnp
Polynucleotide phosphorylase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
      
 0.709
MarR-4
Transcriptional regulators; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
   
 0.608
MarR-2
Transcriptional regulators; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
   
 0.597
folE
GTP cyclohydrolase I; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.524
MarR
Transcriptional regulators; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.508
MarR-3
Transcriptional regulators; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.508
MarR-5
Transcriptional regulators; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.508
yehZ
ABC transporter amino acid permease; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
  
 0.494
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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