Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
XOO4745Hypothetical protein; Putative; ORF located using FrameD. (87 aa)    
Predicted Functional Partners:
DltE
Short-chain dehydrogenases of various substrate specificities; Related to short-chain alcohol dehydrogenases; identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.775
XOO1187
TPR repeat; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.705
OmpR-2
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.705
BaeS-4
Signal transduction histidine kinase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.705
blaI
Transcriptional regulator blaI family; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.573
MecR1
Protein TonB; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
       0.573
XOO1192
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.573
FAA1
Long-chain acyl-CoA synthetases (AMP-forming); Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.507
TenA
Putative transcription activator; Putative; ORF located using Glimmer/Genemark.
       0.501
XOO1183
Uncharacterized conserved protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
       0.456
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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