STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XOO4899Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/FrameD. (111 aa)    
Predicted Functional Partners:
XOO3632
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
    0.831
RpoE-2
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.817
RfaL-2
Lipid A core - O-antigen ligase and related enzymes; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.751
XOO0506
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.738
XOO2930
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.732
CheB
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.729
xpsM
General secretion pathway protein M; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.723
XOO1298
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.713
XOO1435
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.706
XOO4915
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/FrameD; Belongs to the UPF0250 family.
  
     0.696
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.