STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XOO4902Non-hemolytic phospholipase C; Identified by sequence similarity; putative; ORF located using Blastx/FrameD. (122 aa)    
Predicted Functional Partners:
PlcC
Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
     0.967
fecA-5
TonB-dependent receptor; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
 
     0.671
clpS
Conserved hypothetical protein; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.
      
 0.643
smf
DNA processing chain A; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.619
XOO3681
Hypothetical protein; Catalyzes the removal of dipeptides from the N-terminus of oligopeptides.
       0.553
pgmA
Phosphoglycerate mutase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark; Belongs to the phosphoglycerate mutase family.
       0.488
XOO0340
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.487
algC
Phosphomannomutase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
      
 0.484
XOO0425
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.464
XOO1835
Alpha-L-fucosidase; Identified by sequence similarity; putative; ORF located using Blastx/Glimmer/Genemark.
  
     0.445
Your Current Organism:
Xanthomonas oryzae
NCBI taxonomy Id: 291331
Other names: X. oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae KACC 10331, Xanthomonas oryzae pv. oryzae str. KACC 10331, Xanthomonas oryzae pv. oryzae strain KACC 10331
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